Package: EMAS 0.2.4
EMAS: Epigenome-Wide Mediation Analysis Study
DNA methylation is essential for human, and environment can change the DNA methylation and affect body status. Epigenome-Wide Mediation Analysis Study (EMAS) can find potential mediator CpG sites between exposure (x) and outcome (y) in epigenome-wide. For more information on the methods we used, please see the following references: Tingley, D. (2014) <doi:10.18637/jss.v059.i05>, Turner, S. D. (2018) <doi:10.21105/joss.00731>, Rosseel, D. (2012) <doi:10.18637/jss.v048.i02>.
Authors:
EMAS_0.2.4.tar.gz
EMAS_0.2.4.zip(r-4.7)EMAS_0.2.4.zip(r-4.6)EMAS_0.2.4.zip(r-4.5)
EMAS_0.2.4.tgz(r-4.6-any)EMAS_0.2.4.tgz(r-4.5-any)
EMAS_0.2.4.tar.gz(r-4.7-any)EMAS_0.2.4.tar.gz(r-4.6-any)
EMAS_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
EMAS/json (API)
| # Install 'EMAS' in R: |
| install.packages('EMAS', repos = c('https://nie-xiuquan.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:cfc7bc8184. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 167 | ||
| source / vignettes | OK | 175 | ||
| linux-release-x86_64 | OK | 211 | ||
| macos-release-arm64 | OK | 99 | ||
| macos-oldrel-arm64 | OK | 109 | ||
| windows-devel | OK | 136 | ||
| windows-release | OK | 132 | ||
| windows-oldrel | OK | 128 | ||
| wasm-release | OK | 111 |
Exports:EmasEmas.parallelEMAS.volcano
Dependencies:backportsbase64encbootbslibcachemcheckmatecliclustercolorspacecpp11data.tabledigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelavaanlifecyclelme4lpSolvemagrittrMASSMatrixmediationmemoisemimeminqamnormtmultilevelmvtnormnlmenloptrnnetnumDerivpbivnormquadprogR6rappdirsrbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangrmarkdownrpartrstudioapiS7sandwichsassscalesstringistringrtinytexvctrsviridisLitewithrxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A data for 221 participants | data.m |
| An 'Emas' results data. | E.result |
| Epigenome-Wide Mediation Analysis Study | Emas |
| Epigenome-Wide Mediation Analysis Study: Parallel multiple mediation model | Emas.parallel |
| Plotting the volcano plot from the EMAS results | EMAS.volcano |
| A M-value matrix for 221 participants | Mvalue |
